Publications of Kim A.V.

2021

● Kim, A. V., E. A. Shelepova, V. I. Evseenko, A. V. Dushkin, N. N. Medvedev, N. E. Polyakov. Mechanism of the enhancing effect of glycyrrhizin on nifedipine penetration through a lipid membrane // Journal of Molecular Liquids, 344 (2021): 117759. DOI

2019

● A.V. Kim, E.A. Shelepova,  O.Y. Selyutina, E.S. Meteleva, A.V. Dushkin, N.N. Medvedev, N.E. Polyakov, N.Z. Lyakhov. Glycyrrhizin-assisted transport of praziquantel anthelmintic drug through the lipid membrane: an experiment and MD simulation // Molecular Pharmaceutics, 16(7), 2019, 3188-3198. DOI

2018

● E.A. Shelepova, A.V. Kim, V.P. Voloshin, N.N. Medvedev. Intermolecular Voids in Lipid Bilayers in the Presence of Glycyrrhizic Acid // The Journal of Physical Chemistry B, 122.43 (2018): 9938-9946. DOI

● V.P. Voloshin, A.V. Kim, E.A. Shelepova, N.N. Medvedev. Determination of the boundary surface between the lipid bilayer and water.// Journal of Structural Chemistry  2018, 59 (1), P. 96-105. DOI PDF

2016

● Selyutina O.Yu., Apanasenko I.A., Kim A.V., Shelepova E.A., Khalikov S.S., Polyakov N.E. Spectroscopic and molecular dynamics characterization ofglycyrrhizin membrane-modifying activity. Colloids and Surfaces B: Biointerfaces 147 (2016) 459–466. DOI

● Zelikman  M. V., Kim A. V., Medvedev N. N. The structure of small clusters of glycyrrhizic acid with cholesterol: Molecular dynamics simulation // Journal of Structural Chemistry 2016; 57(5), pp 978-984. DOI PDF

2015

● Zelikman M.V., Kim A.V., Medvedev N.N., Selyutina O.Y., Polyakov N.E. Structure of dimers of glycyrrhizic acid in water and their complexes with cholesterol: Molecular dynamics simulation. Journal of Structural Chemistry 56 (1), 67-76. DOI PDF
Russian version: Зеликман М.В., Ким А.В., Медведев Н.Н.,Селютина О.В., Поляков Н.Э. Структура димеров глицирризиновой кислоты в воде и их комплексов с холестерином. Молекулярно-динамическое моделирование // Журнал Структурной Химии, 2015, том 56, №1, стр. 73-82. PDF

● Kim A.V., Medvedev N.N., Tutorial on molecular dynamics (in russian). NSU publishing department, ed. Voitenko H.P., 110 pp, 2015. URL

2014

● Kim, A.V., Medvedev, N.N., Geiger, A. "Molecular dynamics study of the volumetric and hydrophobic properties of the amphiphilic molecule C8E6". Journal of Molecular Liquids. Special issue: Fluid phase associations, Volume 189, pp 74–80, 2014. DOI PDF

● V.P. Voloshin, A.V. Kim, N.N. Medvedev, R. Winter, A. Geiger. "Calculation of the Volumetric Characteristics of Bio-Macromolecules In Solution by the Voronoi-Delaunay Technique". Biophysical Chemistry, 192, 1-9, 2014. DOI

2013

● Kim, A.V., Voloshin, V.P., Medvedev, N.N., Geiger, A. "Decomposition of a protein solution into Voronoi shells and Delaunay layers: calculation of the volumetric properties". Transactions on Computational Science  XX, Springer, Volume 8110, pp 56-71, 2013. DOI PDF

● Medvedev, N.N., Voloshin, V.P., Kim, A.V., Anikeenko, A.V., Geiger, A. Calculation of the partial molar volume and its components on the molecular dynamics models of dilute solutions. // Journal of Structural Chemistry, 2013, Vol 54 (Supplement no.2), S276-S297. DOI PDF (In Russian: URL PDF )

2012

● Kim, A.V., Voloshin, V.P.,  Medvedev, N.N.,  Geiger, A. "Decomposition of a protein solution into Voronoi shells and Delaunay layers". Voronoi Diagrams in Science and Engineering (ISVD), 2012 Ninth International Symposium on, pp. 95-102. DOI

2011

● A.V. Kim, N.N. Medvedev, A. Geiger, "Structure and thermodynamic characteristics of hydration shell of amphiphilic molecule C8E6", Electronic Journal "Structure and dynamics of molecular systems", Ed. G.I. Vasiliev, 10, A, pp. 36-42, 2011. Abstract(En), PDF(Rus)

2010

● A.V. Anikeenko, A.V. Kim, N.N. Medvedev, "Molecular dynamics simulation of the structure of C6 alkanes", Journal of Structural Chemistry, Volume 51, Number 6, pp. 1090-1096, 2010. PDF DOI

2009

● A.V. Anikeenko, A.V. Kim, N.N. Medvedev, "Delaunay simplexes in liquid cyclohexane", proceedings of Sixth International Symposium on Voronoi Diagrams in Science and Engineering (ISVD 2009), 23-26 July 2009, Technical University of Denmark, Kongens Lyngby, Municipality of Lyngby-Taarbæk, Denmark; published by IEEE Computer Society. pp. 271-277. DOI

2006

● A.V. Kim and N.N.Medvedev. "Melting and homogeneous crystallization of a Lennard-Jones systems". Journal of Structural Chemistry, vol.47, Supplement, pp.S141-S150, 2006. PDF