Publications of Voloshin V.P.
2007, 2006, 2005, 2004, 2003, 2002, 2001, 2000, 1999-1990, 1989-1980 2018
● E.A. Shelepova, A.V. Kim, V.P. Voloshin, N.N. Medvedev.
Intermolecular Voids in Lipid Bilayers in the Presence of Glycyrrhizic
Acid // The Journal of Physical Chemistry B, 122.43 (2018): 9938-9946. DOI
● V. P. Voloshin, A. V. Kim, E. A. Shelepova, and N. N. Medvedev. Determination of the boundary surface between the lipid bilayer and water.// Journal of Structural Chemistry 2018, 59 (1), P. 96-105. DOI PDF
2017
● Smolin N, Voloshin VP, Anikeenko AV, Geiger A, Winter R, Medvedev NN. TMAO and urea in the hydration shell of the protein SNase. // Phys Chem Chem Phys. 2017, 19(9):6345-6357. DOI PDF
● B. Fabian, M. Sega, V.P. Voloshin, N.N. Medvedev, P. Jedlovszky. Lateral Pressure Profile and Free Volume Properties in Phospholipid Membranes Containing Anesthetics // J. Phys. Chem. B 2017, 121, 2814 −2824. DOI PDF
2015● Voloshin, V.P.; Medvedev N.N.; Smolin, N. Geiger A.; and Winter R. Exploring volume, compressibility and hydration changes of folded proteins upon compression. Phys. Chem. Chem. Phys., 17, 8499-8508, 2015. DOI PDF ● Voloshin, V.P.; Medvedev N.N.; Smolin, N. Geiger A.; and Winter R. Disentangling Volumetric and Hydration Properties of Proteins // J. Phys. Chem. B, 2015, 119, 1881-1890. DOI PDF
2014● V.P. Voloshin, A.V. Kim, N.N. Medvedev, R. Winter, A. Geiger. Calculation of the Volumetric Characteristics of Bio-Macromolecules In Solution by the Voronoi-Delaunay Technique // Biophysical Chemistry,192, 1-9, 2014. DOI PDF
● V.P. Voloshin, N.N. Medvedev, and A.Geiger. Fast Calculation of the Empty Volume in Molecular Systems by the use of Voronoi-Delaunay Subsimplexes // Trans. on Comput. Sci. XXII, LNCS 8360, p.156, 2014. DOI PDF
2013
● Kim, A.V., Voloshin, V.P., Medvedev, N.N., A. Geiger. Decomposition of
a protein solution into Voronoi shells and Delaunay layers: calculation
of the volumetric properties. // Gavrilova, M.L., Tan, C.J.K.,
Kalantari, B. (eds.), Transactions on Computational Science XX , LNCS,
Springer, Heidelberg, Volume 8110, pp 56-71, 2013. DOI PDF
● Medvedev N.N., Voloshin V.P. Open problem: A formula for calculation of the Voronoi S-region volume.
// Proceedings of the International Symposium on Voronoi Diagrams in
Science and Engineering (ISVD-2013), July 8-10, 2013, Sant Perersburg,
Russia. ISBN-13: 978-0-7695-5034-4, pp. 89-91. DOI● Medvedev, N.N., Kim,
A.V., Voloshin, V.P., Anikeenko, A.V., Geiger, A.
Calculation of the partial molar volume and its components on the
molecular dynamics models of dilute solutions. // Zh. Struct. Khimii
2013, Vol 54 (Supplement no.2), S276-S297 (in Russian).
URL PDF
2012
● A.V. Kim, V.P. Voloshin, N.N. Medvedev, A. Geiger, Decomposition of a Protein Solution into Voronoi Shells and Delaunay Layers.
// Voronoi Diagrams in Science and Engineering (ISVD), 2012 Ninth
International Symposium on, New Jersey, USA. June 27- 29 2012, ISBN:
978-1-4673-1910-2, pp. 95-102. DOI
● G.G. Malenkov, Yu.I. Naberukhin, V.P. Voloshin. Collective effects in molecular motions in liquids. Russian Journal of Physical Chemistry A. 2012, Volume 86, Issue 9, pp 1378-1384. DOI, PDF 2011
● V.P. Voloshin, N.N. Medvedev, M.N. Andrews, R.R. Burri, R. Winter, A. Geiger, Volumetric Properties of Hydrated Peptides: Voronoi-Delaunay Analysis of Molecular Simulation Runs. // Journal of Physical Chemistry B, 2011, 115 (48), pp 14217–14228. DOI
● V.P. Voloshin, A.V. Anikeenko, N.N. Medvedev, A. Geiger, An algorithm for the calculation of volume and surface of unions of spheres. Application for solvation shells
// Proceedings of Eighth International Symposium on Voronoi Diagrams in
Science and Engineering (ISVD 2011), Qingdao, China, June 28th - 30th,
2011, pp. 170-176. DOI2010
● V.P. Voloshin, A.V. Anikeenko, N.N. Medvedev, A. Geiger, D. Stoyan, Hydration Shells in Voronoi Tessellations
// Proceedings of Seventh International Symposium on Voronoi Diagrams
in Science and Engineering (ISVD 2010), 28-30 June 2010, Quebec, Canada,
pp. 254-259. DOI
2009● V.
P. Voloshin, Yu. I. Naberukhin. Hydrogen bond lifetime distributions in
computer-simulated water. Journal of Structural Chemistry, 2009, Volume
50, Issue 1, pp 78-89, DOI, PDF
● V.
P. Voloshin, Yu. I. Naberukhin. Distributions of Hydrogen Bond
Lifetimes in Instantaneous and Inherent Structures of Water. Zeitschrift
für Physikalische Chemie, 2009, Volume 223, Issue 9, pp 999-1011, DOI, PDF
● Yu.I.
Naberukhin, V.P. Voloshin. Structure of ice Ih and ice Ic as described
in the language of Delaunay simplices. Acta Crystallographica Section A.
2011, A67, 507–511. DOI, PDF● G.
Malenkov, Yu. Naberukhin, V. Voloshin. Collective effects in
diffusional motion of water molecules: computer simulation. Structural
Chemistry. 2011, Volume 22, Issue 2, pp 459-463. DOI, PDF
● G.G.
Malenkov, Yu.I. Naberukhin, V.P. Voloshin. Coherent molecular motion in
aquatic environment. Extraction of correlation from noise. Russian
Journal of General Chemistry. 2011, Volume 81, Issue 1, pp 191-199. DOI, PDF
2008
● P. Jedlovszky, L.B. Pártay, A.P. Bartók, V.P. Voloshin,N.N. Medvedev, G. Garberoglio, R. Vallauri. Structural and thermodynamic properties of different phases of supercooled liquid water. // The Journal of Chemical Physics 128, 244503 (2008).2007
● V. P. Voloshin, G. G. Malenkov, Yu. I. Naberukhin. Description of collective effects in computer models of water. Journal of Structural Chemistry, 2007, Volume 48, Issue 6, pp 1066-1072, DOI, PDF
2006
● Medvedev N.N., Voloshin V.P., Luchnikov V.A., Gavrilova M.L. An algorithm for three-dimensional Voronoi S-network . // J. of Comput. Chem. Vol. 27, (14) , pp. 1676 - 1692 (2006). PDF
● M. G. Alinchenko, A. V. Anikeenko, V. P. Voloshin, N. N. Medvedev, D. Paschek, A. Appelhagen, and A. Geiger. Spatial correlations of interatomic voids in molecular liquids studied using delaunay simplices. Journal of Structural Chemistry, Vol. 47, Supplement, pp. S119-S125, 2006. PDF, PDF(Russian)
● Yu. I. Naberukhin, V. P. Voloshin. Sructure of large noncrystalline Lennard-Jones models. // Journal of Structural Chemistry , 47, Supplement, pp S126-S140, 2006. PDF, Doc(Russian)
2005
● Rabinovich A. L., Balabaev N. K., Alinchenko M. G., Voloshin V. P., Medvedev N. N., Jedlovszky P., Computer simulation study of intermolecular voids in unsaturated phosphatidylcholine lipid bilayers, // J. Chem. Phys. 122 Article No. 084906 (2005). PDF
● Alinchenko M.G., Voloshin V.P., Medvedev N.N., Mezei M., Partay L., and Jedlovszky P. Effect of cholesterol on the properties of phospholipid membranes. 4. Interatomic voids. // J. Phys. Chem. B, 109 (34), 16490 -16502 (2005). PDF
● Voloshin V.P., Medvedev N.N., Investigation of the prepeak in the structure factor . The study of inhomogeneous packings of Lennard-Jones atoms.// Zhurnal Strukturnoi Khimii, Vol.46, (1), 96-100 (2005). PDF(Russian)
● Medvedev N.N., Voloshin V.P., Intermolecular voids for structure investigation of computer model of liquids and glasses.// Journal of Structural Chemistry, Vol.46, (1), 98 - 102. abstract, PDF(Russian)
● Voloshin V.P., Medvedev N.N., Naberukhin Yu.I., Geiger A., Klene M. Radial Distribution Functions of Atoms and Voids in Large Computer Models of Water.// Journal of Structural Chemistry 46(3), 438-445 (2005) PDF, PD(Russian)
● Voloshin V.P., Naberukhin Yu.I. Structure of the interparticle space in big noncrystalline packings of the Lennard-Jones atoms and its influence on the diffusion mobility of admixed particles.// Zhurnal Strukturnoi Khimii, 46(2), 273 - 283 (2005) PDF(Russian)
● N.N.Medvedev, A.V. Anikeenko, M.G.Alinchenko, V.P.Voloshin, D.Pashek, A.Appelhagen, A.Geiger. Application of Voronoi diagrams for calculation of the radial correlation of the intermolecular voids.// In Proceedings of The 2nd International Symposium on Voronoi Diagrams in Science and Engineering. Oct. 10-13, 2005, Hynyang University, Seoul, Korea. pp.358-367.
2004
● M.G. Alinchenko and A. V. Anikeenko, N. N. Medvedev and V. P. Voloshin, M. Mezei, P. Jedlovszky. Morphology of Voids in Molecular Systems. A Voronoi-Delaunay Analysis of a Simulated DMPC Membrane. J. Phys. Chem. B, 108 (49), 19056 -19067, 2004. PDF
● A. V.Anikeenko, M. G. Alinchenko, V. P. Voloshin, N. N. Medvedev, M. L. Gavrilova and P. Jedlovszky. Implementation of the Voronoi-Delauney Method for Analysis of Intermolecular Voids. A. Lagana et al. (Eds.): ICCSA 2004, LNCS 3045, pp. 217-226. PDF
● N.N.Medvedev, V.P.Voloshin, A.L.Rabinovich, N.K.Balabaev, P.Jedlovszky. Free space distribution and percolation in computer models of lipidic bilayers. R.S.Vartapetian & others (editors). "Structure and dynamics of molecular systems", 2004, Publication IX, part 1,112 - 115. Kazan. (in Russian)
● A.L.Rabinovich, N.K.Balabaev, V.P.Voloshin, N.N.Medvedev, P.Jedlovszky. Phosphathidilholin bilayers, computer modeling and intermolecular voids research//Structure and dynamics of molecular systems, 2004. Collected lectures thesises and reports of XI All-Russian conference (Yalchik - 2004). Moscow - Yoshkar-Ola - Ufa - Kazan, Publisher Moscow State Technical University, 2004. P.213. (in Russian)
2003
● N.N.Medvedev, V.P.Voloshin, A.Bezrukov, D.Stoyan. From Imperfect Amorphous Structures to a Defective Crystals. Proceedings X-th APAM Topical Seminar and III Conference "Nanoscience and Technology" devoted to 10-th anniversary of APAM. 2-6 June, 2003, p.62-63 Novosibirsk, Russia. (in English)
● V.P.Voloshin, M. G. Alinchenko, N.N.Medvedev, P.Jedlovszky, A.L.Rabinovich. Intermolecular voids structure research in lipid bilayers // Structure and dynamics of molecular systems, 2003. Publication X, part 2, publishing house of Kazan State University, Kazan 150 - 155.
● N.N.Medvedev , V.P.Voloshin. Interatomic voids research in molecular systems. // Structure and dynamics of molecular systems. Publication X, part 1, publishing house of Kazan State University, Kazan 298 - 304, 2003. PDF(Russian)
2002
● V.P.Voloshin, S.Beaufils and N.N.Medvedev. "Void space analysis of the structure of liquids". Journal of Molecular Liquids v.96-97, 2002, p.101 - 112. PDF
● В.П.Волошин, Е.А.Желиговская, Г.Г.Маленков, Ю.И.Наберухин. Структурная неоднородность аморфного льда высокой плотности. // Журн. структ. химии, 2002, т.43, №5, с.844-850. PDF(Russian)
● V.A.Luchnikov, Gavrilova, M.L., Medvedev, N.N., Voloshin V.P. "The Voronoi-Delaunay Approach for the Free Volume Analysis of a Packing of Balls in a Cylindrical Container," Future Generation Computer Systems, Special Issue on Computer Modeling, Algorithms and Supporting Environments, vol. 18, (2002) pp. 673-679, Elsevier. PDF
2001
● V.P.Voloshin, V.A.Luchnikov, N.N.Medvedev. Computer simulation of porous media and quantitative analysis of the pore structure, in book "Modern approaches to investigation the drying processes of porous materials", ed. Parmon V.N., SB of Russian Academy of Science, Novosibirsk, 2001 (in Russian).
● В. П. Волошин, Е. А. Желиговская, Г. Г. Маленков, Ю. И. Наберухин, Д. Л. Тытик. Структуры сеток водородных связей и динамика молекул воды в конденсированных водных системах. // Рос. хим. ж. (ж. Рос. хим. об-ва им. Д.И.Менделеева), 2001, т.XLV, №3, 31-37. PDF(Russian)
● Волошин В.П., Желиговская Е.А., Маленков Г.Г., Наберухин Ю.И. Структурная неоднородность аморфного льда низкой плотности и её влияние на динамику молекул воды. // ЖСХ, 2001, т. 42, № 5, с.948 - 957. PDF(Russian)
2000
● В.П.Волошин, Ю.И.Наберухин. Структурные превращения в аморфной упаковке Леннард-Джонсовских атомов при уменьшении плотности. // Журн. структ. химии, 2000, т.41, №5, с.1005-1012.
1999-1990
● Luchnikov V.A., Medvedev N.N., Voloshin V.P., Geiger A. Simulation Of Transport And Diffusion On The Voronoi Network. In the book: Scientific Computing in Chemical Engineering, ed. F.Keil et al.Springer. Berlin. p.106-113,1999
● V.P.Voloshin, Yu.I.Naberukhin. Homogeneity loss phase transition in packings of Lennard-Jones atoms under density decreasing. J.Mol.Liq., 1999, v.82, p.19-26.
● В.П.Волошин, Н.Н.Медведев, В.Б.Фенелонов, В.Н.Пармон. Компьютерная порометрия монодисперсных силикагелей. ДАН, 1999, т.364 (3), с.337-341.
● V.P. Voloshin, N.N. Medvedev, V.B. Fenelonov, and V.N. Parmon The pore structure investigation on the computer models of dense and low dense packing of spherical particles. // Zh. Strukt. Khimii, 1999, v.40 (4), p.681-692. (in Russian).
● В.П.Волошин, Ю.И.Наберухин О происхождении расщепления второго максимума в радиальной функции распределения аморфных твердых тел. ЖСХ, 1997, т. 38 (1), с.78-88.
● Voloshin V.P., Naberukhin Yu.I., Medvedev N.N., Mu Shik Jhon. Investigation Of Free Volume Percolation Under The Liquid - Glass Phase Transition. J.Chem.Phys. v.102, p.4981- 4986. 1995 PDF
● Н.Н.Медведев, Ю.И.Наберухин, В.П.Волошин. О связи текучести и структуры. Анализ молекулярно-динамической модели жидкого и аморфного рубидия. ЖФХ, 1992. т.66 (1), с.163-166.
● Yu.I.Naberukhin, V.P.Voloshin, N.N.Medvedev. Geometrical analysis of the structure of simple liqids: percolation approach. Mol. Phys., 1991, v.73, No.4, p.917-936. Abstract(Doc)
1989-1980
● V.P.Voloshon, Yu.I.Naberukhin, N.N.Medvedev. Can various classes of atomic configurations (Delaunay simplices) be distinguished in random dense packing of spherical particles? Mol.Simulation, 1989, v.4, p. 209-227.
● Н.Н.Медведев, Ю.И.Наберухин, В.П.Волошин. Структура простых жидкостей как перколяционная проблема на сетке Вороного. ЖСХ, 1989, т.30 (2), с.98-105.
● Medvedev N.N., Voloshin V.P., Naberukhin Yu.I. Structure of simple liquids as a percolation problem on the Voronoi network. // J. Phys. A: Math. Gen. - 1988. - 21. - P. L247 - L252. PDF
● Н.Н.Медведев, В.П.Волошин, Ю.И.Наберухин. Изучение формы атомных конфигураций в плотных леннард-джонсовских системах. // Журн.структ.химии. 1987, т.28, №2, с.62-69.
● Ю.И.Наберухин, В.П.Волошин, Н.Н.Медведев. Собственные структуры конденсированных сред. Машинное моделирование леннард-джонсовских систем. // Расплавы. 1987, т.1, №2, с.71-77.
● N.N.Medvedev, Yu.I.Naberukhin, V.P.Voloshin. Local environmental geometry of atoms in the Lennard-Jones system. Materials Chemistry and Physics, 1986, v.14, p.533-548.
● N.N.Medvedev, Yu.I.Naberukhin, V.P.Voloshin. To the question about icosahedral local structure in simple liquids. // Zh.Strukt.Khimii, 1986, v.27(4), p.91-97, (in Russian). Engl.translation: J.Struct.Chem. 1986, v.27(4),p.581-586.
● V.P.Voloshin, N.N.Medvedev, Yu.I.Naberukhin. Voronoi polihedra of non-regular packings. Part.2. Simple liquids. // J.Struct.Chem. 1985, v.27(3),p.376-383.
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